Multiple Sequence Alignment Search Request

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Body Params
databases
length between 1 and 5

List of database names to search against (all databases are searched by default). Database names are case-insensitive; the response preserves the case you specify. For ColabFold search type, the first database in the list is used for profile generation. When using 'all', uniref30 is automatically placed first.

0 to 1

The e-value threshold for filtering hits when building the Multiple Sequence Alignment. Sequences with an e-value greater than this are not included in the MSA.

1 to 6

The number of MSA iterations to perform. More iterations find more distant homologs.

1 to 10001

The maximum sequences taken from the MSA for model prediction. Note: When GPU Server is enabled (default), this parameter must be set globally via the NIM_GLOBAL_MAX_MSA_DEPTH environment variable at container startup.

output_alignment_formats

The output format of the MSA.

enum

Which type of MSA Search to run for Alignment production.

string
required
length between 1 and 4096

A sequence to search against the MSA databases.

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